May 16th \u2013 18th 9:30-18:00 \u2013\u00a0 <\/b>Institute of Complex Systems of Valpara\u00edso\u00a0<\/b><\/a><\/p>\n The focus will be to \u201cwork-discuss\u201d in different packages of expeditions CEODOS and Atlant Eco relevant from the bioinformatics, data analysis and modeling direction in restricted groups. Ideas of topics are: 1) Sequencing and assembly protocols and final product standards; 2) Biological networks: metabolic, regulatory, diversity, etc.; 3) Biologically defined geographies; 4) Modeling: Lagrangian approaches; macroecology approaches; 5) Data Analysis techniques applied to the ocean.\u00a0<\/span><\/p>\n Day 1 – Tuesday 16:<\/b> \u201cGenomics day: from sequences to biological information\u201d (led by Olivier Jaillon – CEA)<\/b><\/p>\n 10:00-10:30 <\/span> Olivier Jaillon – Genoscope: As genomics sciences meet data sciences and modeling<\/em> (slides<\/a>)<\/span><\/p>\n 10:30-11:00 <\/span> Matt Sullivan – Ohio State U.: Virus eco-genomics <\/em>(slides)<\/a><\/span><\/p>\n 11:00-11:30 <\/span> Eric Pelletier – Genoscope: Climbing the omics complexity ladder <\/em>(slides)<\/a><\/span><\/p>\n 12:00-11:30 <\/span> Coffee Break<\/b><\/p>\n 12:00-12:30 <\/span> Hugo Sarmento and Paula Huber – U. San Carlos: Navigating the challenges and opportunities of genomic science in ocean research in southern countries <\/em>(slides)<\/a><\/span><\/p>\n 12:30-13:00<\/span> Federico Ibarbalz – U. Buenos Aires: Chasing “coccolithophores” – a tale of two vessels, 6 drifters and satellites <\/em>(slides)<\/a><\/span><\/p>\n 13:00-14:30 <\/span> Lunch Break<\/b><\/p>\n 14:30-15:00 Alejandro Maass – U. Chile: Gene regulatory elements a resource to classify ocean microbiome functioning (slides<\/a>)<\/span><\/p>\n 15:00-15:30 <\/span>Alex di Genova – U. O’Higgins: Toward improved MAGs characterization <\/em>(slides)<\/a><\/span><\/p>\n 15:30-16:00<\/span> Nayat S\u00e1nchez and Luis Mart\u00ed – Inria Chile: Applying AI to understand the Ocean and climate change<\/i><\/span><\/p>\n 16:00-18:30 Free d<\/span>iscussion I (Coffee provided in parallel)<\/span><\/p>\n Day 2 – Wednesday 17:<\/b> \u201cThe metabolic ocean world\u201d (coordinated by: Damien Eveillard)<\/b><\/p>\n 9:30-10:00<\/span> Damien Eveillard – U. Nantes: Impacts of the metabolism in the ocean<\/em><\/span><\/p>\n 10:00-10:30<\/span> Sacha Bourgeois-Gironde (on-line) – \u00c9cole Normale Sup. Paris: Designing intellectual rights for marine ecosystems (slides)<\/a><\/em><\/span><\/p>\n 10:30-11:00 Constanza Andreani – U. Chile: Functional characterization of biosynthetic classes <\/em>(slides)<\/a><\/span><\/p>\n 11:00-11:30 <\/span> Coffee Break<\/b><\/p>\n 11:30-12:00 Andre Abreu – Tara Oc\u00e9an: Discussion about Plank’Eco project and its KOPAs proposal <\/em>(slides<\/a>)<\/span><\/p>\n 12:00-12:30 Lars Stemmann: On physical modeling of the Mauritania-Senegal upwelling for Plank’Eco project<\/em><\/p>\n 12:30-13:00 Geraldine Jean – U. Nantes: Models and algorithms for genome comparison and sequence alignment <\/em>(slides)<\/a><\/p>\n 13:00-14:30 <\/span> Lunch Break<\/b><\/p>\n 14:30-15:00 Laura Jim\u00e9nez – U. Chile\/PUC: The ecological niche and applications <\/em>(slides)<\/a><\/span><\/p>\n 15:00-15:30 Antoine Regimbeau – U. Nantes: The metabolic niche and applications <\/em>(slides)<\/a><\/span><\/p>\n 15:30-16:00 Benoit de Delahaye: – U. Nantes An automated technique for model parameterization using data <\/em>(slides)<\/a><\/span><\/p>\n 16:00-18:00\u00a0<\/span> Free d<\/span>iscussion I<\/span>I (Coffee provided in parallel)<\/span><\/p>\n 19:30-22:30 <\/span> Workshop Diner: \u201cTraditional Restaurant of Valpara\u00edso: El Bote Salvavidas\u201d (Muelle Prat)<\/span><\/p>\n Day 3 – Thursday 18:<\/b> \u201cEcology meets mathematical modeling & data science: the seascape\u201d (coordinated by: Daniele Iudicone)<\/b><\/p>\n 9:30-10:00<\/span> Daniele Iudicone – U. Naples: Towards a definition of seascape<\/em><\/span><\/p>\n 10:00-10:30<\/span> Emanuele Pigani – U. Padua: Modeling bio-geographies – a conceptual approach <\/em>(slides<\/a>)<\/span><\/p>\n 10:30-11:00 Paul Fremont – Giorgia Tech.: Using machine learning to infer plankton biogeography and its response to climate change <\/em>(slides)<\/a><\/span><\/p>\n 11:00-11:30 <\/span> Coffee Break<\/b><\/p>\n 11:30-12:00 Matt Sullivan – Ohio State U.: Math challenges in ocean viromics<\/em> <\/span><\/p>\n 12:00-12:30 Luis Valenzuela – Inria Chile: Enhancing Interpretability of Global Plankton Communities Modeling through Multi-Omics and AI Techniques <\/i>(slides<\/a>)<\/span><\/p>\n 12:30-13:00 Hugo Carrillo – Inria Chile: Modeling and Simulation of Ocean Phenomena Using Physics-Based Machine Learning (<\/i>slide)<\/a><\/span><\/p>\n 13:00-14:30 <\/span> Lunch Break<\/b><\/p>\n 14:30-15:00 Nicol\u00e1s Toro – U. Chile: Some applications of causality methods to omics data<\/i><\/span><\/p>\n 15:00-15:30\u00a0 Pablo Marquet – PUC: Ecological ideas for ocean data <\/em>(slides)<\/a><\/span><\/p>\n 15:30-18:30 Free discussion III<\/span>\u00a0(Coffee provided in parallel)<\/span><\/p>\n <\/p>\n","protected":false},"excerpt":{"rendered":" Working Days May 16th \u2013 18th 9:30-18:00 \u2013\u00a0 Institute of Complex Systems of Valpara\u00edso\u00a0 The focus will be to \u201cwork-discuss\u201d in different packages of expeditions CEODOS and Atlant Eco relevant from the bioinformatics, data analysis and modeling direction in restricted groups. Ideas of topics are: 1) Sequencing and assembly protocols and final product standards; 2) … Continue reading Program Part II<\/span>